CDS

Accession Number TCMCG065C23867
gbkey CDS
Protein Id XP_004975274.1
Location 14641650..14644814
Gene LOC101783702
GeneID 101783702
Organism Setaria italica

Protein

Length 1054aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA207554
db_source XM_004975217.2
Definition FACT complex subunit SPT16 [Setaria italica]

EGGNOG-MAPPER Annotation

COG_category E
Description Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. SSRP1 binds specifically to double-stranded DNA (By similarity)
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K20093        [VIEW IN KEGG]
EC 3.6.4.12        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000003        [VIEW IN EMBL-EBI]
GO:0000228        [VIEW IN EMBL-EBI]
GO:0000785        [VIEW IN EMBL-EBI]
GO:0000790        [VIEW IN EMBL-EBI]
GO:0000791        [VIEW IN EMBL-EBI]
GO:0003006        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003682        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005654        [VIEW IN EMBL-EBI]
GO:0005694        [VIEW IN EMBL-EBI]
GO:0005719        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006325        [VIEW IN EMBL-EBI]
GO:0006333        [VIEW IN EMBL-EBI]
GO:0006351        [VIEW IN EMBL-EBI]
GO:0006354        [VIEW IN EMBL-EBI]
GO:0006355        [VIEW IN EMBL-EBI]
GO:0006357        [VIEW IN EMBL-EBI]
GO:0006366        [VIEW IN EMBL-EBI]
GO:0006368        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0007275        [VIEW IN EMBL-EBI]
GO:0008023        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009058        [VIEW IN EMBL-EBI]
GO:0009059        [VIEW IN EMBL-EBI]
GO:0009791        [VIEW IN EMBL-EBI]
GO:0009889        [VIEW IN EMBL-EBI]
GO:0009891        [VIEW IN EMBL-EBI]
GO:0009893        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010228        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010556        [VIEW IN EMBL-EBI]
GO:0010557        [VIEW IN EMBL-EBI]
GO:0010604        [VIEW IN EMBL-EBI]
GO:0010628        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0018130        [VIEW IN EMBL-EBI]
GO:0019219        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0019438        [VIEW IN EMBL-EBI]
GO:0022414        [VIEW IN EMBL-EBI]
GO:0031323        [VIEW IN EMBL-EBI]
GO:0031325        [VIEW IN EMBL-EBI]
GO:0031326        [VIEW IN EMBL-EBI]
GO:0031328        [VIEW IN EMBL-EBI]
GO:0031491        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032501        [VIEW IN EMBL-EBI]
GO:0032502        [VIEW IN EMBL-EBI]
GO:0032774        [VIEW IN EMBL-EBI]
GO:0032784        [VIEW IN EMBL-EBI]
GO:0032786        [VIEW IN EMBL-EBI]
GO:0032968        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034243        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034645        [VIEW IN EMBL-EBI]
GO:0034654        [VIEW IN EMBL-EBI]
GO:0034724        [VIEW IN EMBL-EBI]
GO:0034728        [VIEW IN EMBL-EBI]
GO:0035101        [VIEW IN EMBL-EBI]
GO:0042393        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044249        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044271        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044427        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044451        [VIEW IN EMBL-EBI]
GO:0044454        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0044877        [VIEW IN EMBL-EBI]
GO:0045893        [VIEW IN EMBL-EBI]
GO:0045935        [VIEW IN EMBL-EBI]
GO:0045944        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048608        [VIEW IN EMBL-EBI]
GO:0048731        [VIEW IN EMBL-EBI]
GO:0048856        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0051171        [VIEW IN EMBL-EBI]
GO:0051173        [VIEW IN EMBL-EBI]
GO:0051252        [VIEW IN EMBL-EBI]
GO:0051254        [VIEW IN EMBL-EBI]
GO:0051276        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0061458        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071824        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0080090        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097659        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901362        [VIEW IN EMBL-EBI]
GO:1901576        [VIEW IN EMBL-EBI]
GO:1902680        [VIEW IN EMBL-EBI]
GO:1903506        [VIEW IN EMBL-EBI]
GO:1903508        [VIEW IN EMBL-EBI]
GO:2000112        [VIEW IN EMBL-EBI]
GO:2001141        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCTGATAATGGTAACGCAAAAGGGGGATCTGGAACATATACAATCAATCTAGATAACTTCAGTAAGCGGCTGAAGGTATTCTATGACCATTGGAAGGAACACAAGTCTGATCTTTGGGGTTCTTCTGATGCTATTGCCATTGCTACCCCGCCTCCTTCTGAGGATCTTCGTTATTTGAAATCCTCAGCTCTGGATATCTGGTTGCTTGGATATGAATTTCCAGAAACAATAATTGTCTTCATGCACAAGCAAATACATGTCTTGTGCAGTCAGAAGAAAGCAAATCTGATTGGGACCCTCAAGAAGGCTGCAAATGAGGCTGTTGGTGCTGACATTGTCTTGCATGTGAAATCTAAGAATGGGGATGGTGCTGACTTGATGGATGACATAGTGCAGGCTGTTCGCAATCAGTCTAAATCAGGCAATCCAATTGTTGGGCACATTGCAAAAGAGGCACCTGAGGGTAAGCTTCTTGAAACATGGGCAGACAAGTTATCTGGGTCATCTATACAACTTACAGATGTGACAAATGGCTTCTCTGAGCTTTTCTCTGTGAAGGACTCCACAGAGATCACTTGTGTGAAGAAGGCTGCTTACTTAACTACTTCTGTACTCAGAAATTTTGTGGTTCCAAGGTTGGAGAAAGTTATTGATGAGGAGAAGAAAGTCTCACACTCCTCATTGATGGATGACACGGAAAAGGTCATTCTTGACCCTCTCAAAGTAAAGGTGAAGTTGAAGTCTGATAATGTTGATATTTGCTATCCGCCAGTCTTTCAGAGTGGGGGGAAGTACGATCTCAAGCCTGGCGCCTCTAGCAATGATGACTATCTCTATTATGATTCAGCAAGTGTTATCATCTGTGCACTTGGGTCCAAATATTCAAGCTATTGTTCAAATGTTGCCCGGACATATCTGATAGATGCTATCCCTACGCAGAGTAAAGCATATGAGACCCTTCTGAAAGCTCATGAAGCTGCTATAGAGGCAGTGAAACCAGGCAATCAGATGAGTGCGGTTTATCAAGCTGCAGTGAAGGTGATTGAGAGAGATGCTCCTGAACTACTTCCCAATTTAACAAAGTCAGCTGGAACTGGAATAGGCCTTGAATTCCGAGAATCTGGCTTAAATCTGAATGCCAAGAATGATCGTCGGATAAAACAGGGAATGATTTTTAATATTTCTCTTGGTTTGCATAATGTCCAGGCAGAAACCACCAGTGAAAAGACAAAGCAGTTTTCACTGTTGTTAGCTGATACAGTCTTAGTAACTGAAAAAGGAAATGAGATCTTGACAGCACCTTGCTCCAAGGCTGTTAAGGATGTTGCCTATTCATTCAATGAAGATGAGGAGGATGTTCCTGTGGCAAAGGTGGTGTCAAAGCCTGTTGACGTCGTGCCAACCAAGGCAACTCTCAGGTCGGACAACCAGGAGATGTCCAAGGAAGAACAAAGGAGACAGCACCAGGCTGAACTTGCTCGTCAAAAGAATGAAGAGACTGCTAGAAGGCTTGCTGGGGGTGGTTCTGGTTCTGGTGAAGGACGTGGTCCTGCAAGGGCTTCAAATGAGCTTGTTGCATACAAGAATGTTAATGATGTTCCATTTGTGAGAGAGTTGGTGATACAAGTGGATCAGAAGAATGAAGCTGTCCTCTTACCTATTTATGGCAGCATTGTACCTTTCCATGTTTCTACTGTGAAGAGTGTGACAAGCCACCAGGACAACCGTACCTGCACTATCCGCATCTTCTTCAATGTGCCTGGCATGCCGTTCTCAAATGATAGCAAGCTGAATTCTCAAGGTGCCATCTACTTGAAAGAAATTACATTTCGCTCGAAAGACCCACGGCATAGCAGTGAAGTTGTTCAGCAGATCAAAACGTTGAGGAGGCAAGTTGCATCAAGGGAGTCAGAGAGAGCTGAAAGGGCAACCCTTGTTACTCAGGAGAAGCTTCAGGTGGGAAACAACAGAATGAAGATGATGAGACTTTCTGATGTGTGGATACGACCTGCATTTGGTGGCCGTGGGAGGAAGCTCACAGGAAATCTTGAGGCACATTTCAATGGTTTCAGATATTCTACTTCAAGGGCTGATGAGCGTGTGGACATCATGTATGGTAATATAAAGCATGCCTTTTTCCAGCCTGCAGAGAAAGAAATGATTACTCTCCTTCATTTCCATTTGCACAACCATATCATGGTTGGAAACAAGAAGACAAAGGATGTCCAGTTTTATGTTGAAGTGATGGATGTTGTACAGACTCTTGGTGGCAGTAGGAGATCAGCGCTTGATCCTGATGAGATTGAAGAAGAGCAACGTGAGAGGGATCGGAAGAACAGAATAAACATGGATTTCCAGAACTTTGTGAACAAGGTTAATGATCACTGGTCACAGCCACAGTTCAAGGGGCTCGATCTGGAGTTTGATGTCCCATTGAGAGAGCTTGGGTTTCATGGGGTTCCTTATAAGGCTTCTGCTTTTATAATTCCAACTTCTACTTGTTTGGTGGAGCTGATTGAGACCCCCTTCCTTGTGGTGAGCCTGAGTGAGATAGAGATCGTTAACCTGGAGAGGGTGGGCTTTGGAACAAAGAACTTTGACATGGCTATTGTGTTCAAGGACTTCAAGAAGGATGTTCTCCGCATAGATTCCATCCCTTCGACATCTCTCGATGCAATAAAGGAGTGGCTGGACACAACTGACCTGAAGTACTATGAGAGCAGGCTGAATCTGAACTGGCGTCCGATCCTGAAAACTATCATTGATGATCCTCAGAAGTTCATTGATGACGGTGGCTGGGAGTTCCTGAACATGGAGGCGAGCGACTCCGAGACAGAGGAGACAGAGGAGTCAGACCAGGGTTATGAGCCTTCTGATGCTGAGCCTGAGTCCGAGTCAGAGGATGATGACTCTGACAGCGAGTCCTTGGTGGAATCTGATGATGATGATGAAGAGTCCGATGATGACTCAGAGGAGGAGAAGGGCAAGACCTGGGAGGAGCTGGAGCGCGAGGCAAGTAACGCAGACCGTGAACACGGCGCTGAGTCAGACAGCGAGGAGGAGCGGAGGCGCCGCAAGGCGAAGAGCTTTGGCAAGTCGCGTGCACCGGAGCGCAGCAGCTTCAAGGGAGGTCCGCCATCCAAGAAGCCGAAGTTCAGGTGA
Protein:  
MSDNGNAKGGSGTYTINLDNFSKRLKVFYDHWKEHKSDLWGSSDAIAIATPPPSEDLRYLKSSALDIWLLGYEFPETIIVFMHKQIHVLCSQKKANLIGTLKKAANEAVGADIVLHVKSKNGDGADLMDDIVQAVRNQSKSGNPIVGHIAKEAPEGKLLETWADKLSGSSIQLTDVTNGFSELFSVKDSTEITCVKKAAYLTTSVLRNFVVPRLEKVIDEEKKVSHSSLMDDTEKVILDPLKVKVKLKSDNVDICYPPVFQSGGKYDLKPGASSNDDYLYYDSASVIICALGSKYSSYCSNVARTYLIDAIPTQSKAYETLLKAHEAAIEAVKPGNQMSAVYQAAVKVIERDAPELLPNLTKSAGTGIGLEFRESGLNLNAKNDRRIKQGMIFNISLGLHNVQAETTSEKTKQFSLLLADTVLVTEKGNEILTAPCSKAVKDVAYSFNEDEEDVPVAKVVSKPVDVVPTKATLRSDNQEMSKEEQRRQHQAELARQKNEETARRLAGGGSGSGEGRGPARASNELVAYKNVNDVPFVRELVIQVDQKNEAVLLPIYGSIVPFHVSTVKSVTSHQDNRTCTIRIFFNVPGMPFSNDSKLNSQGAIYLKEITFRSKDPRHSSEVVQQIKTLRRQVASRESERAERATLVTQEKLQVGNNRMKMMRLSDVWIRPAFGGRGRKLTGNLEAHFNGFRYSTSRADERVDIMYGNIKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGSRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVSLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEASDSETEETEESDQGYEPSDAEPESESEDDDSDSESLVESDDDDEESDDDSEEEKGKTWEELEREASNADREHGAESDSEEERRRRKAKSFGKSRAPERSSFKGGPPSKKPKFR